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1. Example Datasets:
Example ResFinder annotated gene list
(ARG List module) (
Bengtsson-Palme J, et al.
)
Example Beef Feedlot cattle dataset
(ARG Table module) (
E Doster, et al.
)
Example Pig and Broiler dataset
(ARG Table module) (
P Munk, et al.
)
Example Beef Feedlot cattle dataset
(Integration module) (
E Doster, et al.
)
2. Database annotation:
ResFinder
(version: 4.1):
.TXT
||
.RDS
CARD
(version: 3.1.3):
.TXT
||
.RDS
MegaRes
(version: 2.0): Full:
.TXT
||
.RDS
; Drugs only:
.TXT
||
.RDS
MegaRes
(version: 1.0.1):
.TXT
||
.RDS
AMRFinder
(version: 1.0):
.TXT
||
.RDS
DeepARG-DB
(version: 1.0):
.TXT
||
.RDS
ARGminer
(version: 1.1.1):
.TXT
||
.RDS
BacMet
(version: 2.0):
.TXT
||
.RDS
ARDB
(version: 1.1):
.TXT
||
.RDS
ARG-ANNOT
(version: 4.0):
.TXT
||
.RDS
Antimicrobial peptide (AMP) dataset
:
.TXT
||
.RDS
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